Mar
16
H5N1 Sequences from Romania
Written by
jane
| 1: EF614305 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=148753547) | http://www.ncbi.nlm.nih.gov/coreweb/images/tabs/pixel.gif Reports (javascript:PopUpMenu2_Set(Reports148753547)) | http://www.ncbi.nlm.nih.gov/coreweb/images/tabs/pixel.gif |
| Influenza A virus (A/swan/Romania/RO-AI-007/CT/2005(H5N1)) hemmaglutinin gene, partial cds gi148753547gbEF614305.1[148753547] | ||
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2: EF614304 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=148753545) http://www.ncbi.nlm.nih.gov/coreweb/images/tabs/pixel.gif
Reports (javascript:PopUpMenu2_Set(Reports148753545))http://www.ncbi.nlm.nih.gov/coreweb/images/tabs/pixel.gif
Influenza A virus (A/wild goose/Romania/RO-AI-008/CT/2005(H5N1)) hemmaglutinin gene, partial cds
gi148753545gbEF614304.1[148753545]
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3: EF614303 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=148753543) http://www.ncbi.nlm.nih.gov/coreweb/images/tabs/pixel.gif
Reports (javascript:PopUpMenu2_Set(Reports148753543))http://www.ncbi.nlm.nih.gov/coreweb/images/tabs/pixel.gif
Influenza A virus (A/juvenile swan/Romania/RO-AI-005/TL/2005(H5N1)) hemmaglutinin gene, partial cds
gi148753543gbEF614303.1[148753543]
01112445556677888900001233336667
86891693366827689301127600481784
29261666911979805722877103945266
-codon-position------------------------------------------112111122 12121111 11111112111
---Index-------------------------------------------------GCAATGGGAGCCCCTACTACGCCTATAATGCT
1 > A/chicken/Kurgan/05/2005(H5N1) ................................ 6 0 , 5 0 1:> A/chicken/Kurgan/05/2005(H5N1)
2 > A/chicken/Nigeria/SO452/2006(H5N1) ......A...T.T..G....T........AT. 14 7 , 13 7 2:> A/chicken/Nigeria/SO452/2006(H5N1)
3 >A/cat/Dagestan/87/06(H5N1) .TGGC..AG.....C........C........ 12 8 , 12 8 3:>A/cat/Dagestan/87/06(H5N1)
4 > A/chicken/Nigeria/OD8/2006(H5N1) .T.G...................C....CA.. 17 5 , 13 5 4:> A/chicken/Nigeria/OD8/2006(H5N1)
5 > A/great crested grebe/Germany/R1226/06(H5N1) ...........T....T..T..T........- 24 5 , 12 4 5:> A/great crested grebe/Germany/R1226/06(H5N1)
6 > A/Egypt/1902-NAMRU3/2007(H5N1) .....AAA.TT.TT.G.C..T..........- 25 11 , 17 10 6:> A/Egypt/1902-NAMRU3/2007(H5N1)
7 > A/turkey/Suzdalka/Nov-01/05(H5N1) -----..A..........G....C.CTG.--- 56 14 , 11 6 7:> A/turkey/Suzdalka/Nov-01/05(H5N1)
8 > A/chicken/Egypt/1892N3-HK49/2007(H5N1) A....AA...T.TT...C..T.........T. 20 9 , 16 9 8:> A/chicken/Egypt/1892N3-HK49/2007(H5N1)
9 > A/chicken/Egypt/1890N3-HK45/2007(H5N1) .....AA..TTTTT.G.C..T.........T. 24 11 , 20 11 9:> A/chicken/Egypt/1890N3-HK45/2007(H5N1)
10 > A/Egypt/0636-NAMRU3/2007(H5N1) .....AA...T.TT.G.C..T.........T. 21 9 , 21 9 10:> A/Egypt/0636-NAMRU3/2007(H5N1)
11 > A/Grebe/Tyva/Tyv06-8/2006(H5N1) ...GC..AG.....C......T.CG....... 20 8 , 19 8 11:> A/Grebe/Tyva/Tyv06-8/2006(H5N1)
12 > A/chicken/Moscow/2/2007(H5N1) .TGGC..AG.....C.T......A........ 20 9 , 19 9 12:> A/chicken/Moscow/2/2007(H5N1)
13 > A/chicken/Suzdalka/Nov-11/05(H5N1) ------------------G....C.CTG.--- 107 26 , 8 5 13:> A/chicken/Suzdalka/Nov-11/05(H5N1)
14 > A/Egypt/2620-NAMRU3/2007(H5N1) A....AAA..T.TT.G.C..T.........T. 29 11 , 24 11 14:> A/Egypt/2620-NAMRU3/2007(H5N1)
15 > A/grebe/Novosibirsk/29/05(H5N1) -----------------....T.--------- 135 27 , 5 1 15:> A/grebe/Novosibirsk/29/05(H5N1)
16 > A/duck/Romania/2/05(H5N1) ------------------..T...G.------ 125 26 , 6 2 16:> A/duck/Romania/2/05(H5N1)
17 >A/swan/Romania/RO-AI-007/CT/2005(H5N1)) ------------------G.T..........C 88 21 , 3 3 17:>A/swan/Romania/RO-AI-007/CT/2005(H5N1))
18 > A/wild goose/Romania/RO-AI-008/CT/2005(H5N1)) ------------------.....C....C..C 88 21 , 4 3 18:> A/wild goose/Romania/RO-AI-008/CT/2005(H5N1))
19 > A/juvenile swan/Romania/RO-AI-005/TL/2005(H5N1)) ------------------.T..T........C 93 21 , 8 3 19:> A/juvenile swan/Romania/RO-AI-005/TL/2005(H5N1))
---Index-------------------------------------------------GCAATGGGAGCCCCTACTACGCCTATAATGCT
-codon-position------------------------------------------112111122 12121111 11111112111
00000000000000000011111111111111
01112445556677888900001233336667
86891693366827689301127600481784
29261666911979805722877103945266
swan and wild goose are similar to the 2005 sequences from Croatia and Turkey , while the juvenile swan is more like the
Bavarian sequences.
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